createRefGenome: Function to match download ref genome platform from UCSC.

In uc-bd2k/CLEAN: Clustering Enrichment Analysis

Function to match download ref genome platform from UCSC.

Description

This function is intended to download ref genome platform from UCSC.

Usage

createRefGenome(filename, genome.id = "hg18", tablename = "refGene")

Arguments

filename	File name with path the platform will be saved to. The platform will be automatically added suffix ".sqlite"
genome.id	Platform id.
tablename	Specific table annoted by UCSC.

Details

This function is intended to download ref genome platform from UCSC and svaed with "filename".

Value

This function returns sqlite object for required data table.

Author(s)

Zhen Hu

References

Publication forthcoming.

Examples

RefTble<-createRefGenome("mm8_refGene",genome.id = "mm8", tablename = "refGene")

uc-bd2k/CLEAN documentation built on Sept. 22, 2022, 4:12 a.m.