gimmOut: An gimmR object, i.e. a list containing a dataframe with gene...

In uc-bd2k/CLEAN: Clustering Enrichment Analysis

An gimmR object, i.e. a list containing a dataframe with gene expression data, and two hclust objects representing the gene clustering and sample clustering, respectively.

Description

The data set contains log-fold changes for 94 genes in 46 samples under 9 different treatments. The complete data set (11,498 genes) can be downloaded from the Gene Expression Omnibus (http://www.ncbi.nlm.nih.gov/sites/entrez?db=gds, accession GSE14933)

Usage

data(gimmOut)

Source

See http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE14933 for details.

References

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE14933 Medvedovic et al. Influence of fatty acid diets on gene expression in rat mammary epithelial cells. 2009. Physiol Genomics 38(1):80-8.

Examples

## not run
data(gimmOut)
require(CLEAN.Rn)
runCLEAN(gimmOut, species = "Rn")

uc-bd2k/CLEAN documentation built on Sept. 22, 2022, 4:12 a.m.