`funcClustAnnot` <-
function(data = NULL,
rclust = NULL,
cclust = NULL,
funcCategories = NULL,
fClustAnnotations = NULL,
bkgList = NULL,
file = "cluster",
maxSize=1000,
minSize=10,
minGenesInCategory=10,
maxGenesInCategory=1000,
minSigsInCategory=2,
inBkg=TRUE,
sigFDR = 0.1,
addCLEANscore2cdt = TRUE,
species = NULL,
estimateNullDistribution = FALSE,
atr.distance="euc",
gtr.distance="euc",
dec='.',
digits=5,
verbose=TRUE,
saveDataObjects = FALSE,
sampleDesc = NULL,
callTreeView = FALSE) {
warning("funcClustAnnot() is deprecated. Please use generateTreeViewFiles() or runCLEAN() instead")
generateTreeViewFiles(data = data, rclust = rclust, cclust = cclust, functionalCategories = funcCategories,
fClustAnnotations = fClustAnnotations, bkgList = bkgList, file = file, maxSize = maxSize, minSize=minSize,
minGenesInCategory = minGenesInCategory, maxGenesInCategory = maxGenesInCategory,
inBkg = inBkg, sigFDR = sigFDR, addCLEANscore2cdt = addCLEANscore2cdt,
species = species, estimateNullDistribution = estimateNullDistribution, dec=dec,
verbose = verbose, saveDataObjects = saveDataObjects,
sampleDesc = sampleDesc, callTreeView = callTreeView)
}
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