plot_bnd_sr_pr_tot_hist: Histogram for SR, PR and SR + PR for BNDs

In umccr/gpgr: Genomics Platform Group Reporting

Histogram for SR, PR and SR + PR for BNDs

Description

Plots histograms for the number of split reads (SR), paired end reads (PR), and their sum (tot) across all BNDs. Observations where the SR or PR value is 0 (NA) are not shown.

Usage

plot_bnd_sr_pr_tot_hist(
  d,
  title = "SR, PR and SR + PR histogram for BNDs",
  subtitle = "Values of 0 (NA) are not shown."
)

Arguments

d	A data.frame with an SR_PR_alt column.
title	Main title of plot.
subtitle	Subtitle of plot.

Value

A ggplot2 plot object.

Examples

x <- system.file("extdata/umccrise/sv/manta.tsv", package = "gpgr")
d <- process_sv(x)$unmelted
plot_bnd_sr_pr_tot_hist(d, "a title")

umccr/gpgr documentation built on April 21, 2024, 1:16 a.m.