purple_kataegis: Get PURPLE Kataegis Regions
In umccr/gpgr: Genomics Platform Group Reporting
purple_kataegis R Documentation
Get PURPLE Kataegis Regions
Description
Reads the purple.somatic.vcf.gz file and extracts variants
within kataegis regions.
Usage
purple_kataegis(x)
Arguments
x
Path to the purple.somatic.vcf.gz file.
Value
A list with a tibble containing variants in kataegis clusters and
various metrics for each variant, and a tibble with a description of each
metric.
Examples
x <- system.file("extdata/purple/purple.somatic.vcf.gz", package = "gpgr")
(k <- purple_kataegis(x))
umccr/gpgr documentation built on April 21, 2024, 1:16 a.m.
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| purple_kataegis | R Documentation |
Get PURPLE Kataegis Regions
Description
Reads the purple.somatic.vcf.gz file and extracts variants
within kataegis regions.
Usage
purple_kataegis(x)
Arguments
x |
Path to the |
Value
A list with a tibble containing variants in kataegis clusters and various metrics for each variant, and a tibble with a description of each metric.
Examples
x <- system.file("extdata/purple/purple.somatic.vcf.gz", package = "gpgr")
(k <- purple_kataegis(x))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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