purple_kataegis: Get PURPLE Kataegis Regions

Description Usage Arguments Value Examples

Description

Reads the purple.somatic.vcf.gz file and extracts variants within kataegis regions.

Usage

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Arguments

x

Path to the purple.somatic.vcf.gz file.

Value

A list with a tibble containing variants in kataegis clusters and various metrics for each variant, and a tibble with a description of each metric.

Examples

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x <- system.file("extdata/purple/purple.somatic.vcf.gz", package = "gpgr")
(k <- purple_kataegis(x))

umccr/gpgr documentation built on Nov. 25, 2021, 1:15 p.m.