plot_bnd_sr_pr_tot_lines: Line plot for SR, PR and SR + PR for BNDs

In umccr/gpgr: Genomics Platform Group Reporting

Line plot for SR, PR and SR + PR for BNDs

Description

Plots the number of split reads (SR), paired end reads (PR), and their sum (tot) across all BNDs, sorted by tot.

Usage

plot_bnd_sr_pr_tot_lines(
  d,
  title = "SR, PR and SR + PR line plot for BNDs",
  subtitle = "Events are sorted by decreasing tot values."
)

Arguments

d	A data.frame with an SR_PR_alt column.
title	Main title of plot.
subtitle	Subtitle of plot.

Value

A ggplot2 plot object.

Examples

x <- system.file("extdata/umccrise/sv/manta.tsv", package = "gpgr")
d <- process_sv(x)$unmelted
plot_bnd_sr_pr_tot_lines(d)

umccr/gpgr documentation built on April 21, 2024, 1:16 a.m.