purple_snv_vcf_read: Read PURPLE Somatic SNV VCF

Description Usage Arguments Value Examples

Description

Reads the purple.somatic.vcf.gz file.

Usage

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Arguments

x

Path to the purple.somatic.vcf.gz file.

Value

A list with the input file as a tibble (with specific INFO fields) and a tibble with a description of each INFO field.

Examples

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x <- system.file("extdata/purple/purple.somatic.vcf.gz", package = "gpgr")
(snv <- purple_snv_vcf_read(x))

umccr/gpgr documentation built on Nov. 25, 2021, 1:15 p.m.