purple_snv_vcf_read: Read PURPLE Somatic SNV VCF
In umccr/gpgr: Genomics Platform Group Reporting
purple_snv_vcf_read R Documentation
Read PURPLE Somatic SNV VCF
Description
Reads the purple.somatic.vcf.gz file.
Usage
purple_snv_vcf_read(x)
Arguments
x
Path to the purple.somatic.vcf.gz file.
Value
A list with the input file as a tibble (with specific INFO fields)
and a tibble with a description of each INFO field.
Examples
x <- system.file("extdata/purple/purple.somatic.vcf.gz", package = "gpgr")
(snv <- purple_snv_vcf_read(x))
umccr/gpgr documentation built on April 21, 2024, 1:16 a.m.
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| purple_snv_vcf_read | R Documentation |
Read PURPLE Somatic SNV VCF
Description
Reads the purple.somatic.vcf.gz file.
Usage
purple_snv_vcf_read(x)
Arguments
x |
Path to the |
Value
A list with the input file as a tibble (with specific INFO fields) and a tibble with a description of each INFO field.
Examples
x <- system.file("extdata/purple/purple.somatic.vcf.gz", package = "gpgr")
(snv <- purple_snv_vcf_read(x))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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