API for umccr/gpgr
Genomics Platform Group Reporting
| Global functions | |
|---|---|
| EFFECT_ABBREVIATIONS | Man page |
| abbreviate_effect | Man page Source code |
| af_summary | Man page Source code |
| bcftools_stats_plot | Man page Source code |
| cancer_rmd | Man page Source code |
| collapse_effect_group | Source code |
| count_pieces | Man page Source code |
| cpdir | Source code |
| date_log | Man page Source code |
| dragen_hrd | Man page Source code |
| filter_and_split_annotations_cnv | Source code |
| filter_and_split_annotations_sv | Source code |
| get_oncokb_genes | Source code |
| gpgr | Man page |
| gpgr-package | Man page |
| hrd_results_tabs | Man page Source code |
| is_vcf | Man page Source code |
| join_breakpoint_entries | Source code |
| mixedrank | Source code |
| mkdir | Man page Source code |
| pkg_exists | Man page Source code |
| plot_bnd_sr_pr_tot_hist | Man page |
| plot_bnd_sr_pr_tot_lines | Man page |
| process_sv | Source code |
| purple_cnv_som_gene_process | Man page Source code |
| purple_cnv_som_gene_read | Man page Source code |
| purple_cnv_som_process | Man page |
| purple_cnv_som_read | Man page |
| purple_kataegis | Man page |
| purple_purity_read | Man page |
| purple_qc_read | Man page |
| purple_snv_vcf_read | Man page |
| read_oncokb | Source code |
| remove_gene_fusion_dups | Source code |
| sash_read_cnv_tsv | Source code |
| sash_read_sv_tsv | Source code |
| session_info_kable | Man page Source code |
| set_many_genes_cnv | Source code |
| set_many_transcripts_sv | Source code |
| split_double_col | Man page Source code |
| split_svs | Source code |
| tidyeval | Man page |
| tsv_is_empty | Man page Source code |
| vcf_is_empty | Man page Source code |
| virusbreakend_summary_read | Man page Source code |
| virusbreakend_vcf_read | Man page Source code |
| write_jsongz | Man page Source code |
| write_tsvgz | Man page Source code |
| write_tsvjsongz | Man page Source code |
