alpha_diversity_measures: Alpha Diversity Measures
In vallenderlab/MicrobiomeR: Analyze Microbiome Data

Description Usage Arguments Value See Also Examples

This function generates various alpha diversity measures include Shannon, Fisher, Coverage, GiniSimpson, and InverseSimpson.

1	alpha_diversity_measures(obj, group = "TreatmentGroup")

`obj`	An object to be converted to a Taxmap object with `create_taxmap`.
`group`	The "TreatmentGroup" or similar grouping from your metadata to denote sample groups, Default: 'TreatmentGroup'

Returns a list of alpha diversity measures with metadata.

View alpha,meta to learn more about generating diversity measures with the microbiome package.

## Not run: 
if (interactive()) {
  library(MicrobiomeR)
  data <- analyzed_silva
  measures <- alpha_diversity_measures(data)
  measures$Shannon
}

## End(Not run)