Description Usage Arguments Value See Also
Generate plots for a list of ordination methods and distances.
1 2 3 | ordination_plots(obj, methods = c("PCoA", "NMDS"),
distances = c("wunifrac", "unifrac", "bray"),
color = "TreatmentGroup", select_otu_table = "otu_proportions")
|
obj |
An object to be converted to a metacoder object with |
methods |
A list of ordination methods, Default: 'c("PCoA", "NMDS")' |
distances |
A list of distance methods, Default: 'c("wunifrac", "unifrac", "bray")' |
color |
Choose the group or factor of which colors will be mapped to, Default: 'TreatmentGroup' |
select_otu_table |
The data table to use in the observation data. Default: "otu_proportions" |
Returns a melted dataframe.
Other Visualizations: alpha_diversity_plot
,
correlation_data
,
correlation_plots
,
correlation_plot
,
heat_tree_parameters
,
heat_tree_plots
,
ordination_plot
, plot_limits
,
save_alpha_diversity_plots
,
save_correlation_plots
,
save_heat_tree_plots
,
save_ordination_plots
,
save_stacked_barplots
,
stacked_barplots
,
stacked_barplot
,
top_coefficients_barplot
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