as_custom_format: As Custom MicrobiomeR Format

In vallenderlab/MicrobiomeR: Analyze Microbiome Data

Description

A function for formatting Taxmap objects in the MicrobiomeR format. This function attempts to give more customization than the as_*_format functions.

Usage

as_custom_format(obj, format, change_name_list = NULL, ...)

Arguments

obj	An object to be converted to a Taxmap object with create_taxmap.
format	The name of the format to convert the object to.
change_name_list	A list with names of the tables in the observation data, that have matching values that are used to change the names of the table. Default: NULL
...	An optional list of parameters to use in the as_*_format function specified

Details

This function is meant to be more helpful for customizing the Taxmap object.

Value

A Taxmap object that we have tried to format with all of our heart.

See Also

create_taxmap, which_format, order_metacoder_data, as_MicrobiomeR_format

Other Formatting: MicrobiomeR_Formats, as_MicrobiomeR_format, as_analyzed_format, as_basic_format, as_phyloseq_format, as_raw_format, melt_taxmap, treatment_matrix

vallenderlab/MicrobiomeR documentation built on Aug. 30, 2019, 11:24 p.m.