as_basic_format: As Basic MicrobiomeR Format

In vallenderlab/MicrobiomeR: Analyze Microbiome Data

Description

Converts a Taxmap object to the basic_format.

Usage

as_basic_format(obj, cols = NULL, out_names = NULL)

Arguments

obj	An object to be converted to a Taxmap object with create_taxmap.
cols	Column names used for calc_taxon_abund. Default: NULL
out_names	Column names of the output used for calc_obs_props. Default: NULL

Details

See the MicrobiomeR_Formats documentation.

Value

A Taxmap object in the "basic_format".

See Also

is_phyloseq_format, is_raw_format, is_basic_format, as_raw_format, order_metacoder_data

calc_taxon_abund, calc_obs_props

Other Formatting: MicrobiomeR_Formats, as_MicrobiomeR_format, as_analyzed_format, as_custom_format, as_phyloseq_format, as_raw_format, melt_taxmap, treatment_matrix

vallenderlab/MicrobiomeR documentation built on Aug. 30, 2019, 11:24 p.m.