heat_tree_parameters: Get Heat Tree Parameters

In vallenderlab/MicrobiomeR: Analyze Microbiome Data

Description

This function gets the parameters used for the heat_tree_plots function.

Usage

heat_tree_parameters(obj, title, treatment_no, ...)

Arguments

obj	A Taxmap object.
title	The title used in the heat_tree plot.
treatment_no	The number of treatment groups in the data.
...	Any of the heat tree parameters list below can be used to change the way the heat_tree output is displayed. However, this function acts as a default list of parameters. The members of the default list will be overridden by the dot parameters. Any variable in obj$data$stats_tax_data can be used to manipulate the heat tree parameters. Function calls from the taxa package must be done explicitly on the Taxmap object.

Value

A list used with do.call and the metacoder::heat_tree function.

See Also

heat_tree

n_obs, taxon_names

list_modify

enquos, is_quosure, eval_tidy

Other Visualizations: alpha_diversity_plot, correlation_data, correlation_plots, correlation_plot, heat_tree_plots, ordination_plots, ordination_plot, plot_limits, save_alpha_diversity_plots, save_correlation_plots, save_heat_tree_plots, save_ordination_plots, save_stacked_barplots, stacked_barplots, stacked_barplot, top_coefficients_barplot

vallenderlab/MicrobiomeR documentation built on Aug. 30, 2019, 11:24 p.m.