top_coefficients_barplot: Top Coefficients Barplot

In vallenderlab/MicrobiomeR: Analyze Microbiome Data

Description

A barplot to visualize which taxa have had the greatest impact on the overall gut composition.

Usage

top_coefficients_barplot(top_coefficients, title = NULL)

Arguments

top_coefficients	Coefficients for the top taxa separating the groups.
title	The title of the plot, Default = NULL

Value

Returns a barplot of the top coefficients

See Also

View permanova to understand how to generate top_coefficents

Other Visualizations: alpha_diversity_plot, correlation_data, correlation_plots, correlation_plot, heat_tree_parameters, heat_tree_plots, ordination_plots, ordination_plot, plot_limits, save_alpha_diversity_plots, save_correlation_plots, save_heat_tree_plots, save_ordination_plots, save_stacked_barplots, stacked_barplots, stacked_barplot

Examples

## Not run: 
if (interactive()) {
  library(MicrobiomeR)
  data <- analyzed_silva
  p <- permanova(obj = data)
  top_coefficients_barplot(p$top_coefficients)
}

## End(Not run)

vallenderlab/MicrobiomeR documentation built on Aug. 30, 2019, 11:24 p.m.