correlation_data: Get Correlation Plot Data

In vallenderlab/MicrobiomeR: Analyze Microbiome Data

Description

Get the correlation plot data comparing all of the treatment groups.

Usage

correlation_data(obj, primary_rank, secondary_rank = TRUE,
  wp_value = 0.05)

Arguments

obj	An object to be converted to a Taxmap object with create_taxmap.
primary_rank	A primary rank used to label the points.
secondary_rank	The secondary rank used to color the points, Default: TRUE
wp_value	The wilcoxon p-value cutoff/threshold, Default: 0.05

Details

DETAILS

Value

Data for the correlation plots.

See Also

agglomerate_taxmap, vlookup

tidyeval, mutate, filter, arrange

filter_obs

Other Visualizations: alpha_diversity_plot, correlation_plots, correlation_plot, heat_tree_parameters, heat_tree_plots, ordination_plots, ordination_plot, plot_limits, save_alpha_diversity_plots, save_correlation_plots, save_heat_tree_plots, save_ordination_plots, save_stacked_barplots, stacked_barplots, stacked_barplot, top_coefficients_barplot

Examples

## Not run: 
if(interactive()){
 #EXAMPLE1
 }

## End(Not run)

vallenderlab/MicrobiomeR documentation built on Aug. 30, 2019, 11:24 p.m.