raw_silva_3: "raw_format" Data with 3 Treatment Groups
In vallenderlab/MicrobiomeR: Analyze Microbiome Data
Description
Usage
Format
Source
References
Description
Data from the Nephele-16S-Qiime-Silva microbiome pipeline
in the form of a taxmap object. This taxmap object has been
formatted into the MicrobiomeR "raw_format".
Usage
1
Format
An object of class "Taxmap" with customized observation tables:
- otu_abundance
An abundance table with otu_id, taxon_id, and Sample_* columns.
- otu_annotations
A taxonomy annotations table with otu_id, taxon_id, and multiple rank columns.
- sample_data
A metadata table with SampleID, BarcodeSequence, LinkerPrimerSequence,
ForwardFastqFile, ReverseFastqFile, TreatmentGroup, SampleName, Description
- phy_tree
A phylogenetic tree.
Source
References
Zhang et al. (2019)
(PubMed)
vallenderlab/MicrobiomeR documentation built on Aug. 30, 2019, 11:24 p.m.
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Description Usage Format Source References
Description
Data from the Nephele-16S-Qiime-Silva microbiome pipeline in the form of a taxmap object. This taxmap object has been formatted into the MicrobiomeR "raw_format".
Usage
1 |
Format
An object of class "Taxmap" with customized observation tables:
- otu_abundance
An abundance table with otu_id, taxon_id, and Sample_* columns.
- otu_annotations
A taxonomy annotations table with otu_id, taxon_id, and multiple rank columns.
- sample_data
A metadata table with SampleID, BarcodeSequence, LinkerPrimerSequence, ForwardFastqFile, ReverseFastqFile, TreatmentGroup, SampleName, Description
- phy_tree
A phylogenetic tree.
Source
References
Zhang et al. (2019) (PubMed)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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