load_MSIGdb: Load and format MSIGdb pathways using msigdbr package
In vallotlab/ChromSCape: Analysis of single-cell epigenomics datasets with a Shiny App
View source: R/diff_analysis_gene_set_enrichment.R
load_MSIGdb R Documentation
Load and format MSIGdb pathways using msigdbr package
Description
Load and format MSIGdb pathways using msigdbr package
Usage
load_MSIGdb(
ref,
GeneSetClasses = c("c1_positional", "c2_curated", "c3_motif", "c4_computational",
"c5_GO", "c6_oncogenic", "c7_immunologic", "hallmark")
)
Arguments
ref
Reference genome, either mm10 or hg38
GeneSetClasses
Which classes of MSIGdb to load
Value
A list containing the GeneSet (list), GeneSetDf (data.frame) and
GenePool character vector of all possible genes
vallotlab/ChromSCape documentation built on Oct. 15, 2023, 1:47 p.m.
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View source: R/diff_analysis_gene_set_enrichment.R
| load_MSIGdb | R Documentation |
Load and format MSIGdb pathways using msigdbr package
Description
Load and format MSIGdb pathways using msigdbr package
Usage
load_MSIGdb(
ref,
GeneSetClasses = c("c1_positional", "c2_curated", "c3_motif", "c4_computational",
"c5_GO", "c6_oncogenic", "c7_immunologic", "hallmark")
)
Arguments
ref |
Reference genome, either mm10 or hg38 |
GeneSetClasses |
Which classes of MSIGdb to load |
Value
A list containing the GeneSet (list), GeneSetDf (data.frame) and GenePool character vector of all possible genes
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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