num_cell_after_QC_filt_scExp: Table of cells before / after QC

In vallotlab/ChromSCape: Analysis of single-cell epigenomics datasets with a Shiny App

Table of cells before / after QC

Description

Table of cells before / after QC

Usage

num_cell_after_QC_filt_scExp(scExp, annot, datamatrix)

Arguments

scExp	A SingleCellExperiment object.
annot	A raw annotation data.frame of cells before filtering.
datamatrix	A matrix of cells per regions before filtering.

Value

A formatted kable in HTML.

Examples

raw <- create_scDataset_raw()
scExp = create_scExp(raw$mat, raw$annot)
scExp_filtered = filter_scExp(scExp)
## Not run:  num_cell_after_QC_filt_scExp(
scExp_filtered,as.data.frame(SingleCellExperiment::colData(scExp)), counts(scExp))
## End(Not run)

vallotlab/ChromSCape documentation built on Oct. 15, 2023, 1:47 p.m.