num_cell_after_cor_filt_scExp: Number of cells before & after correlation filtering
In vallotlab/ChromSCape: Analysis of single-cell epigenomics datasets with a Shiny App
View source: R/correlation_filtering_clustering.R
num_cell_after_cor_filt_scExp R Documentation
Number of cells before & after correlation filtering
Description
Number of cells before & after correlation filtering
Usage
num_cell_after_cor_filt_scExp(scExp, scExp_cf)
Arguments
scExp
SingleCellExperiment object before correlation filtering.
scExp_cf
SingleCellExperiment object atfer correlation filtering.
Value
A colored kable with the number of cells per sample before and after
filtering for display
Examples
data("scExp")
scExp_cf = correlation_and_hierarchical_clust_scExp(scExp)
scExp_cf = filter_correlated_cell_scExp(scExp_cf,
corr_threshold = 99, percent_correlation = 1)
## Not run: num_cell_after_cor_filt_scExp(scExp,scExp_cf)
vallotlab/ChromSCape documentation built on Oct. 15, 2023, 1:47 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/correlation_filtering_clustering.R
| num_cell_after_cor_filt_scExp | R Documentation |
Number of cells before & after correlation filtering
Description
Number of cells before & after correlation filtering
Usage
num_cell_after_cor_filt_scExp(scExp, scExp_cf)
Arguments
scExp |
SingleCellExperiment object before correlation filtering. |
scExp_cf |
SingleCellExperiment object atfer correlation filtering. |
Value
A colored kable with the number of cells per sample before and after filtering for display
Examples
data("scExp")
scExp_cf = correlation_and_hierarchical_clust_scExp(scExp)
scExp_cf = filter_correlated_cell_scExp(scExp_cf,
corr_threshold = 99, percent_correlation = 1)
## Not run: num_cell_after_cor_filt_scExp(scExp,scExp_cf)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.