plot_coverage_BigWig: Coverage plot

In vallotlab/ChromSCape: Analysis of single-cell epigenomics datasets with a Shiny App

Coverage plot

Description

Coverage plot

Usage

plot_coverage_BigWig(
  coverages,
  label_color_list,
  peaks = NULL,
  chrom,
  start,
  end,
  ref = "hg38"
)

Arguments

coverages	A list containing sample coverage as GenomicRanges
label_color_list	List of colors, list names are labels
peaks	A GRanges object containing peaks location to plot (optional)
chrom	Chromosome
start	Start
end	End
ref	Genomic Reference

Value

A coverage plot annotated with genes

Examples

data(scExp)

vallotlab/ChromSCape documentation built on Oct. 15, 2023, 1:47 p.m.