preprocess_TFIDF: Preprocess scExp - TF-IDF

In vallotlab/ChromSCape: Analysis of single-cell epigenomics datasets with a Shiny App

Preprocess scExp - TF-IDF

Description

Preprocess scExp - TF-IDF

Usage

preprocess_TFIDF(scExp, scale = 10000, log = TRUE)

Arguments

scExp	A SingleCellExperiment Object
scale	A numeric to multiply the matrix in order to have human readeable numbers. Has no impact on the downstream analysis
log	Wether to use neperian log on the TF-IDF normalized data or not.

Value

A SingleCellExperiment object.

Examples

raw <- create_scDataset_raw()
scExp = create_scExp(raw$mat, raw$annot)
scExp = preprocess_TFIDF(scExp)
head(SingleCellExperiment::normcounts(scExp))

vallotlab/ChromSCape documentation built on Oct. 15, 2023, 1:47 p.m.