preprocess_TPM: Preprocess scExp - Transcripts per Million (TPM)
In vallotlab/ChromSCape: Analysis of single-cell epigenomics datasets with a Shiny App
View source: R/preprocessing_filtering_reduction.R
preprocess_TPM R Documentation
Preprocess scExp - Transcripts per Million (TPM)
Description
Preprocess scExp - Transcripts per Million (TPM)
Usage
preprocess_TPM(scExp)
Arguments
scExp
A SingleCellExperiment Object
Value
A SingleCellExperiment object.
Examples
raw <- create_scDataset_raw()
scExp = create_scExp(raw$mat, raw$annot)
scExp = preprocess_TPM(scExp)
head(SingleCellExperiment::normcounts(scExp))
vallotlab/ChromSCape documentation built on Oct. 15, 2023, 1:47 p.m.
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View source: R/preprocessing_filtering_reduction.R
| preprocess_TPM | R Documentation |
Preprocess scExp - Transcripts per Million (TPM)
Description
Preprocess scExp - Transcripts per Million (TPM)
Usage
preprocess_TPM(scExp)
Arguments
scExp |
A SingleCellExperiment Object |
Value
A SingleCellExperiment object.
Examples
raw <- create_scDataset_raw()
scExp = create_scExp(raw$mat, raw$annot)
scExp = preprocess_TPM(scExp)
head(SingleCellExperiment::normcounts(scExp))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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