reduce_dim_batch_correction: Reduce dimension with batch corrections
In vallotlab/ChromSCape: Analysis of single-cell epigenomics datasets with a Shiny App
View source: R/preprocessing_filtering_reduction.R
reduce_dim_batch_correction R Documentation
Reduce dimension with batch corrections
Description
Reduce dimension with batch corrections
Usage
reduce_dim_batch_correction(scExp, mat, batch_list, n)
Arguments
scExp
SingleCellExperiment
mat
The normalized count matrix
batch_list
List of batches
n
Number of PCs to keep
Value
A list containing the SingleCellExperiment with batch info and
the corrected pca
vallotlab/ChromSCape documentation built on Oct. 15, 2023, 1:47 p.m.
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View source: R/preprocessing_filtering_reduction.R
| reduce_dim_batch_correction | R Documentation |
Reduce dimension with batch corrections
Description
Reduce dimension with batch corrections
Usage
reduce_dim_batch_correction(scExp, mat, batch_list, n)
Arguments
scExp |
SingleCellExperiment |
mat |
The normalized count matrix |
batch_list |
List of batches |
n |
Number of PCs to keep |
Value
A list containing the SingleCellExperiment with batch info and the corrected pca
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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