results_enrichmentTest: Resutls of hypergeometric gene set enrichment test

In vallotlab/ChromSCape: Analysis of single-cell epigenomics datasets with a Shiny App

Resutls of hypergeometric gene set enrichment test

Description

Run hypergeometric enrichment test and combine significant pathways into a data.frame

Usage

results_enrichmentTest(
  differentialGenes,
  enrichment_qval,
  GeneSets,
  GeneSetsDf,
  GenePool
)

Arguments

differentialGenes	Genes significantly over / under expressed
enrichment_qval	Adusted p-value threshold above which a pathway is considered significative
GeneSets	List of pathways
GeneSetsDf	Data.frame of pathways
GenePool	Pool of possible genes for testing

Value

A data.frame with pathways passing q.value threshold

vallotlab/ChromSCape documentation built on Oct. 15, 2023, 1:47 p.m.