table_enriched_genes_scExp: Creates table of enriched genes sets

In vallotlab/ChromSCape: Analysis of single-cell epigenomics datasets with a Shiny App

Creates table of enriched genes sets

Description

Creates table of enriched genes sets

Usage

table_enriched_genes_scExp(
  scExp,
  set = "Both",
  group = "C1",
  enr_class_sel = c("c1_positional", "c2_curated", "c3_motif", "c4_computational",
    "c5_GO", "c6_oncogenic", "c7_immunologic", "hallmark")
)

Arguments

scExp	A SingleCellExperiment object containing list of enriched gene sets.
set	A character vector, either 'Both', 'Overexpressed' or 'Underexpressed'. ('Both')
group	The "group" name from differential analysis. Can be the cluster name or the custom name in case of a custom differential analysis.
enr_class_sel	Which classes of gene sets to show. (c('c1_positional', 'c2_curated', ...))

Value

A DT::data.table of enriched gene sets.

Examples

data("scExp")
## Not run: table_enriched_genes_scExp(scExp)

vallotlab/ChromSCape documentation built on Oct. 15, 2023, 1:47 p.m.