API for vallotlab/IDclust
Iterative Differential Clustering for single-cell
| Global functions | |
|---|---|
| IDC_DA_scEpigenomics | Man page |
| IDC_DA_scRNA | Man page |
| IDC_summary_scEpigenomics | Man page |
| IDC_summary_scRNA | Man page |
| Seu | Man page |
| add_gene_to_DA_list | Man page Source code |
| calculate_FalseNegative | Man page Source code |
| calculate_FalsePositive | Man page Source code |
| cell_type_markers | Source code |
| create_pseudobulk_mat | Man page Source code |
| create_pseudobulk_mat.Seurat | Man page Source code |
| create_pseudobulk_mat.default | Man page Source code |
| differential_ChromSCape | Man page Source code |
| differential_Seurat | Man page Source code |
| differential_edgeR_pseudobulk_LRT | Man page Source code |
| differential_edgeR_pseudobulk_LRT.Seurat | Man page Source code |
| differential_edgeR_pseudobulk_LRT.default | Man page Source code |
| differential_pathway | Man page Source code |
| find_differentiated_clusters | Man page Source code |
| find_differentiated_clusters.Seurat | Man page Source code |
| find_differentiated_clusters.default | Man page Source code |
| heatmap_scExp | Source code |
| iterative_differential_clustering | Man page Source code |
| iterative_differential_clustering.Seurat | Man page Source code |
| iterative_differential_clustering.default | Man page Source code |
| lm_list | Man page |
| plot_cluster_network | Man page Source code |
| plot_cluster_network.Seurat | Man page Source code |
| plot_cluster_network.default | Man page Source code |
| processing_ChromSCape | Man page Source code |
| processing_Seurat | Man page Source code |
| reconstruct_markers | Source code |
| scExp | Man page |
| summarise_DA | Man page Source code |
| top_differential_markers | Man page Source code |
| top_enriched_pathways | Man page Source code |
