phyloseq_long_treemap: Do a treemap based on the long version of a phyloseq file

In vaulot/dvutils: A set of utilities

Description

Plot the treemaps and returns a list with a ggplot and a df with the summary of the data

Usage

phyloseq_long_treemap(
  df,
  group1,
  group2,
  title,
  colors = NULL,
  label_group1 = TRUE
)

Arguments

df	Data frame obtained from a phyloseq file using the function phyloseq_transform_to_long
group1	first grouping level (do not quote)
group2	second grouping level (do not quote)
title	Title for the treemap
colors	If NULL then the default viridis palette is used. If named vectors then the colors
label_group1	If true, the higher level is labeled. If false, only boundaries are marked

Value

Plot the treemap Returns a list made of 2 elements

• gg = the treemap as ggplot

• df = a dataframe with the summarized data

Examples

my_list <- phyloseq_long_treemap(phyloseq_long, division, class, "Singapore strait", colors=
                                 structure(c("black", "white"),.Names="Mamiellophyceae", "Dinophyceae"))

vaulot/dvutils documentation built on Nov. 20, 2021, 11:01 a.m.