Files in vincentgarin/mppSim

Functions for simulation in MPP

R/AlleleSeries.R R/BetaVal.R R/BetaVal2.R R/FDR.R R/FDR2.R R/FDRRegTable.R R/FDRTable.R R/FDR_QTL_detail.R R/FDRresProcessing.R R/IncMatQTL.R R/IncMatQTLMQE.R R/NindCr.R R/QCMarkers.R R/QTLDetection.R R/QTLDetection2.R R/QTLDetectionlmFast.R R/QTL_FDR.R R/QTL_TPR.R R/QposSelect.R R/RDQ.R R/RDQRegTable.R R/RDQresProcessing.R R/SampleMPPDesign.R R/SampleMPPDesign2.R R/SimPheno.R R/SimPheno2.R R/TPR.R R/TPRQTLmodelMPP.R R/TPRRegTable.R R/TPRRegTable2.R R/TPRRegTableIndQTL.R R/TPRTable.R R/TPR_QTL_detail.R R/TPRdesignQTL.R R/TPRmodelQTL.R R/TPRresProcessing.R R/TPorFP.R R/dQTLTab.R R/dQTLTab2.R R/fct_LD_computation.R R/fct_LD_decay.R R/fct_LD_plot.R R/fct_cross_scheme_NAM.R R/formMppData.R R/formMppData2.R R/form_par_per_cross.R R/geno_012.R R/het_det.R R/mc_sim_pheno.R R/mpp_kinship.R R/plot_TP_FP.R R/sc_sim_pheno.R R/sign_star.R R/sim_mpp_cross.R R/utils_QTL_pos_sample.R R/utils_allele_effect.R R/utils_mc_allele_effect_equal.R R/utils_mc_allele_effect_series.R R/utils_mc_calcul_denom_equal.R R/utils_mc_calcul_denom_series.R R/utils_mc_calcul_pheno.R R/utils_mc_const_inter.R R/utils_mc_param_cross.R R/utils_mk_eff_dist.R R/utils_scale_center_X.R R/utils_split_FA_nFA.R dev/Annexe_Memoire_CM.Rmd dev/Compa_var_theo_empir_HWE_CM.Rmd dev/Generalisation_plusieurs_cross_variance_CM.Rmd dev/Notebook.R dev/check_mpp_sim_cross.R dev/pkg_dev.R dev/script_empi_vs_theo_CM.R dev/test_F2_simulation.R dev/test_multi_cross_CM.R dev/test_sim_var_1cr.R dev/test_sim_var_1cr_IBD_IBS.R man/AlleleSeries.Rd man/EUNAM_map.Rd man/FDR.Rd man/FDR2.Rd man/FDRRegTable.Rd man/FDRTable.Rd man/FDR_QTL_detail.Rd man/FDRresProcessing.Rd man/IncMatQTL.Rd man/LD_computation.Rd man/LD_decay.Rd man/LD_plot.Rd man/NindCr.Rd man/QCMarkers.Rd man/QTLDetection.Rd man/QTLDetection2.Rd man/QTLDetectionlmFast.Rd man/QTL_FDR.Rd man/QTL_TPR.Rd man/QposSelect.Rd man/RDQ.Rd man/RDQRegTable.Rd man/RDQresProcessing.Rd man/SampleMPPDesign.Rd man/SampleMPPDesign2.Rd man/SimPheno.Rd man/SimPheno2.Rd man/TPR.Rd man/TPRQTLmodelMPP.Rd man/TPRRegTable.Rd man/TPRRegTable2.Rd man/TPRRegTableIndQTL.Rd man/TPRTable.Rd man/TPR_QTL_detail.Rd man/TPRdesignQTL.Rd man/TPRmodelQTL.Rd man/TPRresProcessing.Rd man/TPorFP.Rd man/cross_scheme_NAM.Rd man/dQTLTab.Rd man/dQTLTab2.Rd man/formMppData.Rd man/formMppData2.Rd man/form_par_per_cross.Rd man/geno_par.Rd man/mc_sim_pheno.Rd man/mpp_kinship.Rd man/plot_TP_FP.Rd man/sc_sim_pheno.Rd man/sign_star.Rd man/sim_mpp_cross.Rd vignettes/QTL_eff_sim_MPP.Rmd vignettes/Theory_QTL_variance_MPP.Rmd