dQTLTab: Table with distance to the simulated QTL

View source: R/dQTLTab.R

dQTLTabR Documentation

Table with distance to the simulated QTL

Description

This function measure the distance between the simulated QTL and the largest significant peak.

Usage

dQTLTab(
  QTL_true = Q_sim[1:n_rep],
  QTL_detected = Q_res,
  des_names = des_names,
  n_par = n_par,
  n_des = n_des,
  n_mod = 4,
  n_QTL = 8,
  mod_names = c("cr", "par", "anc", "biall"),
  N = N
)

Arguments

QTL_true

list of true QTL positions.

QTL_detected

list results of detected QTLs.

des_names

MPP design names. Use only: 'Diallel', 'Chessboard', 'Factorial', 'NAM' or 'Realized'. Default = NULL.

n_par

Number of parents of the different designs

n_des

Number of MPP design. Default = 9.

n_mod

Number of QTL detection models. Default = 4.

n_QTL

Number of simulated QTL. Default = 8.

mod_names

Models names. Default = c("cr", "par", "anc", "biall").

N

Total number of individuals in the population

Value

A matrix with the first column being the average RDQ over the repetitions and the other being the incidence matrices of the factors

Author(s)

Vincent Garin


vincentgarin/mppSim documentation built on Oct. 11, 2024, 3:18 p.m.