plot_TP_FP: QTL profile plot with true and false positive QTLs

In vincentgarin/mppSim: Functions for simulation in MPP

QTL profile plot with true and false positive QTLs

Description

QTL profile plot with true and false positive QTLs

Usage

plot_TP_FP(
  Qprof,
  QTL_TRUE,
  QTL_TP = NULL,
  QTL_FP = NULL,
  type = "l",
  main = "QTL profile",
  threshold = 3,
  text.size = 18
)

Arguments

Qprof	Object of class QTLprof returned by the function mpp_SIM or mpp_CIM, or three columns numeric matrix with chromosome, marker position and -log10(p-values).
QTL_TRUE	Optional argument. List of QTL true QTL positions
QTL_TP	Optional argument. List of false positive QTLs.
QTL_FP	Optional argument. List of QTL true positive QTLs.
type	Character expression indicating the type of plot should be drawn: "l" for lines , "h" for vertical bar. Default = "l".
main	Title of the graph. Default = "QTL profile".
threshold	Numeric QTL significance threshold value draw on the plot. Default = 3.
text.size	Numeric value specifying the size of graph axis text elements. Default = 18.

Author(s)

Vincent Garin

Examples

Not now

vincentgarin/mppSim documentation built on Oct. 11, 2024, 3:18 p.m.