Man pages for vincentgarin/mppSim
Functions for simulation in MPP
| AlleleSeries | Form QTL incidence matrices |
| cross_scheme_NAM | cross_scheme_NAM |
| dQTLTab | Table with distance to the simulated QTL |
| dQTLTab2 | Table with distance to the simulated QTL |
| EUNAM_map | Reduced map maize EU-NAM Dent population |
| FDR | False discovery rate |
| FDR2 | False discovery rate 2 |
| FDR_QTL_detail | Detail results FDR QTLs |
| FDRRegTable | FDR regression table results |
| FDRresProcessing | Processing FDR results |
| FDRTable | FDR Table |
| formMppData | Form mppData objects |
| formMppData2 | Form mppData object |
| form_par_per_cross | form parent per cross information in a diallel |
| geno_par | Selection parent genotype data EU-NAM Dent population |
| IncMatQTL | Form QTL incidence matrices |
| LD_computation | LD_computation |
| LD_decay | LD_decay |
| LD_plot | LD_plot |
| mc_sim_pheno | mc_sim_pheno |
| mpp_kinship | Compute linkage desequilibrium adjusted kinship |
| NindCr | Nb individual per cross |
| plot_TP_FP | QTL profile plot with true and false positive QTLs |
| QCMarkers | Quality control on markers |
| QposSelect | Select QTL positions |
| QTLDetection | QTL detection |
| QTLDetection2 | QTL detection |
| QTLDetectionlmFast | QTL detection |
| QTL_FDR | Details QTL FDR |
| QTL_TPR | Details QTL TPR |
| RDQ | Resolution distance to QTL |
| RDQRegTable | RDQ Results for regression |
| RDQresProcessing | Processing RDQ results |
| SampleMPPDesign | Sample MPP design |
| SampleMPPDesign2 | Sample MPP design |
| sc_sim_pheno | sc_sim_pheno |
| sign_star | Significance star |
| sim_mpp_cross | Simulate MPP crosses population |
| SimPheno | Simulation of phenotypic values |
| SimPheno2 | Simulation of phenotypic values |
| TPorFP | TP or FP QTL |
| TPR | True positive rate |
| TPRdesignQTL | TPR for MPP design x QTL combination |
| TPRmodelQTL | TPR for model x QTL combination |
| TPR_QTL_detail | Detail results TPR QTLs |
| TPRQTLmodelMPP | TPR for QTL x model x MPP combination |
| TPRRegTable | TPR Results for regression |
| TPRRegTable2 | TPR results for single type of QTL effect simulation |
| TPRRegTableIndQTL | Table of TPR results for single QTLs |
| TPRresProcessing | Processing TPR results |
| TPRTable | TPR table |
