TPR_QTL_detail: Detail results TPR QTLs

In vincentgarin/mppSim: Functions for simulation in MPP

Detail results TPR QTLs

Description

Detail results TPR QTLs

Usage

TPR_QTL_detail(
  QTL_true,
  QTL_detected,
  d_QTL,
  n_des = 9,
  n_mod = 4,
  mod_names = c("cr", "par", "anc", "biall"),
  des_names,
  n_par,
  N
)

Arguments

QTL_true	list of true QTL positions.
QTL_detected	list results of detected QTLs.
d_QTL	distance to the QTL.
n_des	Number of MPP design. Default = 9.
n_mod	Number of QTL detection models. Default = 4.
mod_names	Models names. Default = c("cr", "par", "anc", "biall").
des_names	MPP design names. Use only: 'Diallel', 'Chessboard', 'Factorial', 'NAM' or 'Realized'. Default = NULL.
n_par	Number of parents of the different designs
N	Total number of individuals in the population

Value

A data.frame with for each TPR QTL the replication, the design, the number of parents of the design, the number of indidual per cross, the model, the -log10(p.value) and the distance to a simulated QTL, (999 if the QTL was on a chromosome with no simulated QTL). For the run (combination of rep, design and model) where no TPR QTL was present, the -log10pval and the distance to QTL are set to NA.

Author(s)

Vincent Garin

vincentgarin/mppSim documentation built on Oct. 11, 2024, 3:18 p.m.