Files in vittoriofortino84/COPS

Clustering algorithms for Omics-driven Patient Stratification

R/ad-data.R R/brca-data.R R/characterization.R R/clustering.R R/clustering_pipeline.R R/consensus_kernel.R R/evaluation_metrics.R R/feature_extraction.R R/kernels.R R/knn_clustering.R R/multi_omics.R R/network_analysis.R R/pathway_enrichment.R R/pso-data.R R/rwrfgsea.R R/survival_analysis.R R/utility_functions.R README.md man/COPS.Rd man/DSC.Rd man/ECMC.Rd man/KEGG_networks.Rd man/PIK.Rd man/RWRFGSEA.Rd man/ad_ge_micro_zscore.Rd man/ad_studies.Rd man/brca_multi_omics.Rd man/cbind_fill.Rd man/center_kernel.Rd man/cluster_associations.Rd man/clustering_analysis.Rd man/clustering_dissimilarity_from_data.Rd man/clustering_metrics.Rd man/coexpression_network_unweighted.Rd man/data_preprocess.Rd man/dimensionality_reduction.Rd man/ecdf_transform.Rd man/expressionToRWFeatures.Rd man/feature_associations.Rd man/format_scores.Rd man/gene_module_eigengenes.Rd man/gene_module_score.Rd man/genes_to_pathways.Rd man/getHumanPPIfromSTRINGdb.Rd man/get_kernel_weights.Rd man/get_multi_omic_kernels.Rd man/global_kernel_kmeans.Rd man/heatmap_annotated.Rd man/heatmap_annotations.Rd man/jaccard_matrix.Rd man/jaccard_similarity.Rd man/kernel_kmeans.Rd man/kernelized_kmeans.Rd man/knn_g.Rd man/mkkm_mr.Rd man/multi_omic_clustering.Rd man/node_betweenness_parallel.Rd man/pareto_fronts.Rd man/pareto_plot.Rd man/pathway_gene_subnetworks.Rd man/pathway_networks.Rd man/plot_pvalues.Rd man/plot_similarity_matrix.Rd man/psoriasis_clinical_example.Rd man/psoriasis_degs_example.Rd man/psoriasis_example_MEs.Rd man/psoriasis_rnaseq_corrected.Rd man/psoriasis_rnaseq_example.Rd man/psoriasis_rnaseq_normalized.Rd man/rbind_fill.Rd man/reorder_method_factors.Rd man/retrieveDiseaseGenesOT.Rd man/scoring.Rd man/seeded_rwr.Rd man/stability_evaluation.Rd man/subsample_association_analysis.Rd man/subsample_clustering_evaluation.Rd man/subsample_dimred.Rd man/subsample_module_evaluation.Rd man/subsample_pathway_enrichment.Rd man/subsample_survival_evaluation.Rd man/subsampling.Rd man/survival_preprocess.Rd man/triple_viz.Rd man/univariate_features.Rd man/unsigned_TOM_matrix.Rd man/weighted_linear_kernel.Rd vignettes/Breast_Cancer.Rmd vignettes/Psoriasis.Rmd