setup_entities2: preparing for a small number of entry points to owlready2...
In vjcitn/ontoProc: processing of ontologies of anatomy, cell lines, and so on
setup_entities2 R Documentation
preparing for a small number of entry points to owlready2 mediated by
basilisk, this setup function will ingest OWL, enumerate classes and their
names, and produce the 'parents' list, which can then be used with ontology_index
to produce a functional ontology representation
Description
preparing for a small number of entry points to owlready2 mediated by
basilisk, this setup function will ingest OWL, enumerate classes and their
names, and produce the 'parents' list, which can then be used with ontology_index
to produce a functional ontology representation
Usage
setup_entities2(owlfn, cache_object = TRUE)
Arguments
owlfn
character(1) path to OWL file
cache_object
logical(1) if TRUE, cache the 'ontology_index' instance in BiocFileCache::BiocFileCache()
Examples
pa = get_ordo_owl_path()
orde = setup_entities2(pa)
orde
vjcitn/ontoProc documentation built on Nov. 22, 2024, 6:11 p.m.
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| setup_entities2 | R Documentation |
preparing for a small number of entry points to owlready2 mediated by basilisk, this setup function will ingest OWL, enumerate classes and their names, and produce the 'parents' list, which can then be used with ontology_index to produce a functional ontology representation
Description
preparing for a small number of entry points to owlready2 mediated by basilisk, this setup function will ingest OWL, enumerate classes and their names, and produce the 'parents' list, which can then be used with ontology_index to produce a functional ontology representation
Usage
setup_entities2(owlfn, cache_object = TRUE)
Arguments
owlfn |
character(1) path to OWL file |
cache_object |
logical(1) if TRUE, cache the 'ontology_index' instance in BiocFileCache::BiocFileCache() |
Examples
pa = get_ordo_owl_path()
orde = setup_entities2(pa)
orde
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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