siblings_TAG: generate a TermSet with siblings of a given term, excluding...

In vjcitn/ontoProc: processing of ontologies of anatomy, cell lines, and so on

generate a TermSet with siblings of a given term, excluding that term by default

Description

generate a TermSet with siblings of a given term, excluding that term by default

acquire the label of an ontology subject tag

acquire the labels of children of an ontology subject tag

Usage

siblings_TAG(Tagstring = "EFO:1001209", ontology, justSibs = TRUE)

label_TAG(Tagstring = "EFO:0000311", ontology)

children_TAG(Tagstring = "EFO:1001209", ontology)

Arguments

Tagstring	a character(1) that identifies a term
ontology	instance of ontology_index (S3) from ontologyIndex
justSibs	character(1)

Value

TermSet instance

character(1)

TermSet instance

Note

for label_TAG, Tagstring may be a vector

Examples

efoOnto = getOnto("efoOnto")
siblings_TAG( "EFO:1001209", efoOnto )
efoOnto = getOnto("efoOnto")
label_TAG( "EFO:0000311", efoOnto )
efoOnto = getOnto("efoOnto")
children_TAG( ontology = efoOnto )

vjcitn/ontoProc documentation built on Oct. 12, 2024, 4:35 p.m.