API for vsbuffalo/ProgenyArray
Some statistical genetics for progeny array experiments
| Global functions | |
|---|---|
| HW | Man page |
| HWPlot | Man page |
| MendelianTransmissionWithError | Man page |
| PhasingTiles-class | Man page |
| ProgenyArray | Man page |
| ProgenyArray-class | Man page |
| ProgenyArray-package | Man page |
| SimulatedProgenyArray | Man page |
| SimulatedProgenyArray-class | Man page |
| allSibFamilies | Man page |
| alleleFreqs | Man page |
| approxGeneticMap | Man page |
| caclulateLODs | Man page |
| calcFreqs | Man page |
| calcFreqs,ProgenyArray-method | Man page |
| emHaplotypeImpute | Man page |
| emPlot | Man page |
| extractProgenyHaplotypes | Man page |
| fathers | Man page |
| fathers,ProgenyArray-method | Man page |
| fathers<- | Man page |
| filterSibFamilies | Man page |
| freqs | Man page |
| freqs,ProgenyArray-method | Man page |
| freqs<- | Man page |
| geneticTiles | Man page |
| genotypeFreqs | Man page |
| genotypingErrorMatrix | Man page |
| granges,ProgenyArray-method | Man page |
| hapAgreementStats | Man page |
| inferParents | Man page |
| inferParents,ProgenyArray-method | Man page |
| inferParents,SimulatedProgenyArray-method | Man page |
| isSelfed | Man page |
| isSelfed,ProgenyArray-method | Man page |
| loadGeneticMap | Man page |
| lodcutoff | Man page |
| lodcutoff<- | Man page |
| miMatrixPerTile | Man page |
| miRates | Man page |
| mothers | Man page |
| mothers,ProgenyArray-method | Man page |
| mothers<- | Man page |
| parentGenotypes | Man page |
| parentGenotypes,ProgenyArray-method | Man page |
| parentGenotypes,SimulatedProgenyArray-method | Man page |
| parentLLPlot | Man page |
| parentLLPlot,ProgenyArray-method | Man page |
| parentNames | Man page |
| parentNames,ProgenyArray-method | Man page |
| parentNames<- | Man page |
| parentage | Man page |
| parents | Man page |
| parents,ProgenyArray-method | Man page |
| phaseParents | Man page |
| phaseParents,ProgenyArray-method | Man page |
| phaseSibFamily | Man page |
| phases | Man page |
| phases,ProgenyArray-method | Man page |
| physicalTiles | Man page |
| plotGeneticMap | Man page |
| predictGeneticMap | Man page |
| progenyArray,SimulatedProgenyArray-method | Man page |
| progenyGenotypes | Man page |
| progenyGenotypes,ProgenyArray-method | Man page |
| progenyGenotypes,SimulatedProgenyArray-method | Man page |
| progenyNames | Man page |
| progenyNames,ProgenyArray-method | Man page |
| progenyNames<- | Man page |
| show,PhasingTiles-method | Man page |
| show,ProgenyArray-method | Man page |
| sibFamily | Man page |
| snpTiles | Man page |
| suppliedMothers | Man page |
| suppliedMothers,ProgenyArray-method | Man page |
| suppliedMothers<- | Man page |
| tileRef | Man page |
| whichLociComplete | Man page |
| whichLociPolymorphic | Man page |
| whichRowColMax | Man page |
