README.md
In waldronlab/BugSigDBStats: BugSigDB Stats and Analysis
BugSigDBStats
BugSigDB Stats and Analysis
Citation
Ludwig Geistlinger, Chloe Mirzayi, Fatima Zohra, Rimsha Azhar,
Shaimaa Elsafoury, Clare Grieve, Jennifer Wokaty, Samuel David Gamboa-Tuz,
Pratyay Sengupta, Isaac Hecht, Aarthi Ravikrishnan, Rafael Goncalves,
Eric Franzosa, Karthik Raman, Vincent Carey, Jennifer B. Dowd,
Heidi E. Jones, Sean Davis, Nicola Segata, Curtis Huttenhower, Levi Waldron (2023)
BugSigDB captures patterns of differential abundance across a broad range of host-associated microbial signatures.
Nature Biotechnology, doi: 10.1038/s41587-023-01872-y.
bugsigdb-related links
- bugsigdb.org: A Comprehensive Database of Published Microbial Signatures
- BugSigDB issue tracker: Report bugs or feature requests for bugsigdb.org
- BugSigDBExports: Hourly data exports of bugsigdb.org
- Stable data releases: Periodic manually-reviewed stable data releses on Zenodo
- bugsigdbr: R/Bioconductor access to published microbial signatures from BugSigDB
- Curation issues: Report curation issues, requests studies to be added
- bugSigSimple: Simple analyses of BugSigDB data in R
- BugSigDBStats: Statistics and trends of BugSigDB
- BugSigDBPaper: Reproduces analyses of the Nature Biotechnology publication
- community-bioc Slack Team: Join #bugsigdb channel
waldronlab/BugSigDBStats documentation built on Oct. 21, 2023, 6:11 a.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
BugSigDBStats
BugSigDB Stats and Analysis
Citation
Ludwig Geistlinger, Chloe Mirzayi, Fatima Zohra, Rimsha Azhar, Shaimaa Elsafoury, Clare Grieve, Jennifer Wokaty, Samuel David Gamboa-Tuz, Pratyay Sengupta, Isaac Hecht, Aarthi Ravikrishnan, Rafael Goncalves, Eric Franzosa, Karthik Raman, Vincent Carey, Jennifer B. Dowd, Heidi E. Jones, Sean Davis, Nicola Segata, Curtis Huttenhower, Levi Waldron (2023) BugSigDB captures patterns of differential abundance across a broad range of host-associated microbial signatures. Nature Biotechnology, doi: 10.1038/s41587-023-01872-y.
bugsigdb-related links
- bugsigdb.org: A Comprehensive Database of Published Microbial Signatures
- BugSigDB issue tracker: Report bugs or feature requests for bugsigdb.org
- BugSigDBExports: Hourly data exports of bugsigdb.org
- Stable data releases: Periodic manually-reviewed stable data releses on Zenodo
- bugsigdbr: R/Bioconductor access to published microbial signatures from BugSigDB
- Curation issues: Report curation issues, requests studies to be added
- bugSigSimple: Simple analyses of BugSigDB data in R
- BugSigDBStats: Statistics and trends of BugSigDB
- BugSigDBPaper: Reproduces analyses of the Nature Biotechnology publication
- community-bioc Slack Team: Join #bugsigdb channel
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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