testAssociation: Test association of a taxon with a certain category of a...

In waldronlab/BugSigDBStats: BugSigDB Stats and Analysis

Test association of a taxon with a certain category of a column

Description

Test association of a taxon with a certain category of a column

Usage

testAssociation(
  dat,
  taxon,
  column = "Condition",
  category = "",
  direction = c("BOTH", "UP", "DOWN")
)

Arguments

dat	a data.frame storing BugSigDB data
taxon	character. A taxonomic name.
column	character. A column of dat that contains the category thats hould be tested for association.
category	character. One or more categories that should be tested for association.
direction	character. Indicates direction of abundance change for signatures to be included. Use "UP" to restrict computation to signatures with increased abundance in the exposed group. Use "DOWN" to restrict to signatures with decreased abundance in the exposed group. Defaults to "BOTH" which will not filter signatures by direction of abundance change.

Value

A sorted table with taxon stats for the chosen metadata column

waldronlab/BugSigDBStats documentation built on Oct. 21, 2023, 6:11 a.m.