makeDist: Title Create a Jaccard or overlap dissimilarity matrix from...

In waldronlab/BugSigDBStats: BugSigDB Stats and Analysis

Title Create a Jaccard or overlap dissimilarity matrix from the output of calcPairwiseOverlaps

Description

Title Create a Jaccard or overlap dissimilarity matrix from the output of calcPairwiseOverlaps

Usage

makeDist(overlaps, use = "jaccard", names)

Arguments

overlaps	A data.frame output from the calcPairwiseOverlaps function
use	Either "overlap" or "jaccard"
names	A list of signature names

Value

a Dist object of (1 - overlap) or (1 - jaccard)

Examples

testlist <- list(a = 1:3, b = 3, c = 3:4)
(all <- calcPairwiseOverlaps(testlist))
sigs <- names(testlist)
makeDist(all, "jaccard", sigs)
makeDist(all, "overlap", sigs)

waldronlab/BugSigDBStats documentation built on Oct. 21, 2023, 6:11 a.m.