getTaxonStats: Taxon stats

In waldronlab/BugSigDBStats: BugSigDB Stats and Analysis

Taxon stats

Description

Taxon stats

Usage

getTaxonStats(
  dat,
  taxon,
  column = "Condition",
  direction = c("BOTH", "UP", "DOWN")
)

Arguments

dat	a data.frame storing BugSigDB data
taxon	character. A taxonomic name.
column	character. A column of dat that should be tabled.
direction	character. Indicates direction of abundance change for signatures to be included. Use "UP" to restrict computation to signatures with increased abundance in the exposed group. Use "DOWN" to restrict to signatures with decreased abundance in the exposed group. Defaults to "BOTH" which will not filter signatures by direction of abundance change.

Value

A sorted table with taxon stats for the chosen metadata column

waldronlab/BugSigDBStats documentation built on Oct. 15, 2024, 5:16 p.m.