CellBarcode: DNA Barcode Analysis toolkit

In wenjie1991/CellBarocde: Cellular DNA Barcode Analysis toolkit

DNA Barcode Analysis toolkit

Description

The package CellBarcode performs Cellular DNA Barcode analysis. It can handle all kinds of DNA barcodes, as long as the barcode is within a single sequencing read and has a pattern that can be matched by a regular expression. CellBarcode can handle barcodes with flexible lengths, with or without UMI (unique molecular identifier). This tool also can be used for pre-processing some amplicon data such as CRISPR gRNA screening, immune repertoire sequencing, and metagenome data.

Author(s)

Maintainer: Wenjie Sun [e-mail] (ORCID)

Authors:

• Anne-Marie Lyne [e-mail]

• Leila Perie [e-mail]

See Also

Useful links:

• https://wenjie1991.github.io/CellBarcode/

• Report bugs at https://github.com/wenjie1991/CellBarcode/issues

wenjie1991/CellBarocde documentation built on June 1, 2025, 11:17 p.m.