messyBc slot of BarcodeObj object contains the raw barcode reads
frequency data. For more detail about the
messyBc slot, see
bc_messyBc is used to access
the 'messyBc' slot in the
bc_messyBc(barcodeObj, isList = TRUE) ## S4 method for signature 'BarcodeObj' bc_messyBc(barcodeObj, isList = TRUE)
A logical value, if TRUE (default), the return is a list with each
sample as an element. Otherwise, the function will return a
list is requested, in the
list each element is a
data.frame corresponding to the successive samples. Each
data.frame has at most 3 columns: 1.
umi_seq (optional): UMI
barcode_seq: barcode sequence. 3.
count: how many
reads a full sequence has.
data.frame is requested, the
data.frame in the list
described above are combined into one
data.frame by row, with an extra
sample_name for identifying sample.
data(bc_obj) # get the data in messyBc slot # default the return value is a list bc_messyBc(bc_obj) # The return value can be a data.frame bc_messyBc(bc_obj, isList=FALSE) ###
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