bc_barcodes: Gets barcode sequences
In wenjie1991/CellBarocde: Cellular DNA Barcode Analysis toolkit

bc_barcodes

R Documentation

Gets barcode sequences

Description

bc_barcodes used to get the barcode sequences in BarcodeObj object. The input BarcodesObj object should be pre-processed by bc_cure_* functions, such as bc_cure_depth, bc_cure_umi.

Usage

bc_barcodes(barcodeObj, unlist = TRUE)

## S4 method for signature 'BarcodeObj'
bc_barcodes(barcodeObj, unlist = TRUE)

Arguments

`barcodeObj`	A `BarcodeObj` object.
`unlist`	A logical value. If TRUE, the function returns a vector of unique barcode list from all samples; otherwise a list will be returned. In the latter case, each element of the list contains the barcodes of a sample.

Value

A character vector or a list.

Examples

data(bc_obj)

# Get unique barcodes vector of all samples
bc_barcodes(bc_obj)

# Get a list with each element containing barcodes from one sample
bc_barcodes(bc_obj, unlist = FALSE)

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wenjie1991/CellBarocde documentation built on Aug. 10, 2024, 11:03 a.m.