bc_summary_seqQc: Summary barcodeQcSet
In wenjie1991/CellBarocde: Cellular DNA Barcode Analysis toolkit
bc_summary_seqQc R Documentation
Summary barcodeQcSet
Description
Summary the "total read count" and "read length" of each samples within
a BarcodeQcSet object, and output a data.frame with sample by
row and different metrics by column.
Usage
bc_summary_seqQc(x)
## S4 method for signature 'BarcodeQcSet'
bc_summary_seqQc(x)
Arguments
x
a barcodeQcSet object.
Value
A data.frame with 5 columns: sample_name,
total_read, median_read_length, p5_read_length and
p95_read_length.
Examples
fq_file <- dir(
system.file("extdata", "mef_test_data", package = "CellBarcode"),
full=TRUE)
bc_summary_seqQc(bc_seq_qc(fq_file))
###
wenjie1991/CellBarocde documentation built on April 17, 2024, 4:41 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| bc_summary_seqQc | R Documentation |
Summary barcodeQcSet
Description
Summary the "total read count" and "read length" of each samples within
a BarcodeQcSet object, and output a data.frame with sample by
row and different metrics by column.
Usage
bc_summary_seqQc(x)
## S4 method for signature 'BarcodeQcSet'
bc_summary_seqQc(x)
Arguments
x |
a barcodeQcSet object. |
Value
A data.frame with 5 columns: sample_name,
total_read, median_read_length, p5_read_length and
p95_read_length.
Examples
fq_file <- dir(
system.file("extdata", "mef_test_data", package = "CellBarcode"),
full=TRUE)
bc_summary_seqQc(bc_seq_qc(fq_file))
###
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.