bc_summary_seqQc: Summary barcodeQcSet

Description Usage Arguments Value Examples

Description

Summary the "total read count" and "read length" of each samples within a BarcodeQcSet object, and output a data.frame with sample by row and different metrics by column.

Usage

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bc_summary_seqQc(x)

## S4 method for signature 'BarcodeQcSet'
bc_summary_seqQc(x)

Arguments

x

a barcodeQcSet object.

Value

A data.frame with 5 columns: sample_name, total_read, median_read_length, p5_read_length and p95_read_length.

Examples

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fq_file <- dir(
    system.file("extdata", "mef_test_data", package = "CellBarcode"),
    full=TRUE)

bc_summary_seqQc(bc_seq_qc(fq_file))
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wenjie1991/CellBarocde documentation built on Dec. 23, 2021, 5:11 p.m.