nameB | R Documentation |
names latent variables according to their pathway useage (if any)
nameB(plierRes, top = 1, fdr.cutoff = 0.01, use = c("coef", "AUC"))
plierRes |
A PLIER result |
top |
The number of pathway to use. Only the top pathway (one with the largest coefficient) is used by default |
fdr.cutoff |
The cross-validation significance cutoff for a pathway to be considered for naming. If no pathways satisfy the cutoff the raw coefficients are used. |
Choice |
of coef or AUC, whether LVs are named based on U coefficients or AUCs. Defualt: coef. |
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