plotU | R Documentation |
plot the U matrix from a PLIER decomposition
plotU( plierRes, auc.cutoff = 0.6, fdr.cutoff = 0.05, indexCol = NULL, indexRow = NULL, top = 3, sort.row = F, ... )
plierRes |
the result returned by PLIER |
auc.cutoff |
the AUC cutoff for pathways to be displayed, increase to get a smaller subset of U |
fdr.cutoff |
the significance cutoff for the pathway-LV association |
indexCol |
restrict to a subset of the columns (LVs) |
indexRow |
restrict to a subset of rows (pathways). Useful if only interested in pathways of a specific type |
top |
the number of top pathways to discplay for each LV |
sort.row |
do not custer the matrix but instead sort it to display the positive values close do the 'diagonal' |
... |
options to be passed to pheatmap |
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