plotMat: generic function to plot the non-zero elements of a sparse...

In wgmao/PLIER: Pathway-Level Information Extractor (PLIER): a generative model for gene expression data

generic function to plot the non-zero elements of a sparse matrix

Description

generic function to plot the non-zero elements of a sparse matrix

Usage

plotMat(
  matrix,
  scale = T,
  trim.names = 50,
  cutoff = NULL,
  col.scale = NULL,
  ...
)

Arguments

matrix	the input matrix
scale	rescale the columns to max=1
trim.names	the maximum length of row and column lables
cutoff	Sets values (both positive and negative) bellow this number to 0
col.scale	custom color scale
...	additional argumend to be passed to pheatmap

wgmao/PLIER documentation built on May 11, 2022, 10:34 p.m.