Files in wolfemd/genomicMateSelectR
Genomic Mate Selection
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/cassavabasePipeline.R
R/convertDart2vcf.R
R/genomicMateSelectR-package.R
R/gmsFunctions.R
R/helpers.R
R/imputationPipeline.R
R/parentWiseCrossVal.R
R/predCrossVar.R
R/utils-pipe.R
README.md
_pkgdown.yml
data-raw/simulate_example_data.R
data-raw/tidySimOutput_and_SP.Rdata
data/blups.rda
data/doseMat.rda
data/genmap.rda
data/grms.rda
data/haploMat.rda
data/ped.rda
data/phenos.rda
data/recombFreqMat.rda
data/snpeffsA.rda
data/snpeffsAD.rda
data/snpeffsDirDom.rda
docs/404.html
docs/LICENSE-text.html
docs/articles/index.html
docs/articles/non_additive_models.html
docs/articles/non_additive_models_files/header-attrs-2.11/header-attrs.js
docs/articles/start_here.html
docs/articles/start_here_files/figure-html/unnamed-chunk-23-1.png
docs/articles/start_here_files/header-attrs-2.11/header-attrs.js
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/backsolveSNPeff.html
docs/reference/calcCrossLD.html
docs/reference/calcGameticLD.html
docs/reference/calcPropMissing.html
docs/reference/centerDosage.html
docs/reference/compound.html
docs/reference/convertDart2vcf.html
docs/reference/convertVCFtoDosage.html
docs/reference/createGenomewideDosage.html
docs/reference/crosses2predict.html
docs/reference/curateTrialOneTrait.html
docs/reference/curateTrialsByTrait.html
docs/reference/detectExptDesigns.html
docs/reference/dose2domDev.html
docs/reference/dose2domDevGenotypic.html
docs/reference/effectsArray2list.html
docs/reference/exposition.html
docs/reference/filter_positions.html
docs/reference/fitMultiTrialModel.html
docs/reference/genmap2recombfreq.html
docs/reference/genoVarCovarMatFunc.html
docs/reference/genomicMateSelectR-package.html
docs/reference/getAF.html
docs/reference/getMAF.html
docs/reference/getMarkEffs.html
docs/reference/getPropHom.html
docs/reference/index.html
docs/reference/intensity.html
docs/reference/kinship.html
docs/reference/maf_filter.html
docs/reference/makeParentFolds.html
docs/reference/makeTrialTypeVar.html
docs/reference/meanPredAccuracy.html
docs/reference/mergeVCFs.html
docs/reference/nestByTrials.html
docs/reference/nestDesignsDetectedByTraits.html
docs/reference/nestForMultiTrialAnalysis.html
docs/reference/nestTrialsByTrait.html
docs/reference/pipe.html
docs/reference/postImputeFilter.html
docs/reference/postImputeFilterBeagle4pt1.html
docs/reference/predCrossMeans.html
docs/reference/predCrossVars.html
docs/reference/predOneCross.html
docs/reference/predOneCrossVar.html
docs/reference/predictCrossMeans.html
docs/reference/predictCrossVars.html
docs/reference/predictCrosses.html
docs/reference/quadform.html
docs/reference/readDBdata.html
docs/reference/remove_invariant.html
docs/reference/renameAndSelectCols.html
docs/reference/runBeagle4pt1GL.html
docs/reference/runBeagle5.html
docs/reference/runCrossVal.html
docs/reference/runGenomicPredictions.html
docs/reference/runParentWiseCrossVal.html
docs/reference/splitVCFbyChr.html
docs/reference/varPredAccuracy.html
docs/sitemap.xml
genomicMateSelectR.Rproj
man/backsolveSNPeff.Rd
man/calcCrossLD.Rd
man/calcGameticLD.Rd
man/calcPropMissing.Rd
man/centerDosage.Rd
man/compound.Rd
man/convertDart2vcf.Rd
man/convertVCFtoDosage.Rd
man/createGenomewideDosage.Rd
man/crosses2predict.Rd
man/curateTrialOneTrait.Rd
man/curateTrialsByTrait.Rd
man/detectExptDesigns.Rd
man/dose2domDev.Rd
man/dose2domDevGenotypic.Rd
man/effectsArray2list.Rd
man/exposition.Rd
man/filter_positions.Rd
man/fitMultiTrialModel.Rd
man/genmap2recombfreq.Rd
man/genoVarCovarMatFunc.Rd
man/genomicMateSelectR-package.Rd
man/getAF.Rd
man/getMAF.Rd
man/getMarkEffs.Rd
man/getPropHom.Rd
man/intensity.Rd
man/kinship.Rd
man/maf_filter.Rd
man/makeParentFolds.Rd
man/makeTrialTypeVar.Rd
man/meanPredAccuracy.Rd
man/mergeVCFs.Rd
man/nestByTrials.Rd
man/nestDesignsDetectedByTraits.Rd
man/nestForMultiTrialAnalysis.Rd
man/nestTrialsByTrait.Rd
man/pipe.Rd
man/postImputeFilter.Rd
man/postImputeFilterBeagle4pt1.Rd
man/predCrossMeans.Rd
man/predCrossVars.Rd
man/predOneCross.Rd
man/predOneCrossVar.Rd
man/predictCrossMeans.Rd
man/predictCrossVars.Rd
man/predictCrosses.Rd
man/quadform.Rd
man/readDBdata.Rd
man/remove_invariant.Rd
man/renameAndSelectCols.Rd
man/runBeagle4pt1GL.Rd
man/runBeagle5.Rd
man/runCrossVal.Rd
man/runGenomicPredictions.Rd
man/runParentWiseCrossVal.Rd
man/splitVCFbyChr.Rd
man/varPredAccuracy.Rd
vignettes/.gitignore
vignettes/non_additive_models.Rmd
vignettes/references.bib
vignettes/start_here.Rmd
