mergeVCFs: Merge two VCFs into one
In wolfemd/genomicMateSelectR: Genomic Mate Selection
View source: R/imputationPipeline.R
mergeVCFs R Documentation
Merge two VCFs into one
Description
Uses bcftools merge. Also requires tabix.
Usage
mergeVCFs(inPath = NULL, inVCF1, inVCF2, outPath = NULL, outName)
Arguments
outName
Details
NOTICE: This function is part of a family of functions ("imputation_functions") developed as part of the NextGen Cassava Breeding Project genomic selection pipeline.
For some examples of their useage:
See Also
Other imputation_functions:
convertDart2vcf(),
convertVCFtoDosage(),
createGenomewideDosage(),
filter_positions(),
postImputeFilterBeagle4pt1(),
postImputeFilter(),
runBeagle4pt1GL(),
runBeagle5(),
splitVCFbyChr()
wolfemd/genomicMateSelectR documentation built on July 1, 2022, 10:42 p.m.
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View source: R/imputationPipeline.R
| mergeVCFs | R Documentation |
Merge two VCFs into one
Description
Uses bcftools merge. Also requires tabix.
Usage
mergeVCFs(inPath = NULL, inVCF1, inVCF2, outPath = NULL, outName)
Arguments
outName |
Details
NOTICE: This function is part of a family of functions ("imputation_functions") developed as part of the NextGen Cassava Breeding Project genomic selection pipeline.
For some examples of their useage:
See Also
Other imputation_functions:
convertDart2vcf(),
convertVCFtoDosage(),
createGenomewideDosage(),
filter_positions(),
postImputeFilterBeagle4pt1(),
postImputeFilter(),
runBeagle4pt1GL(),
runBeagle5(),
splitVCFbyChr()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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