kinship: Construct several types of kinship matrix

In wolfemd/genomicMateSelectR: Genomic Mate Selection

Construct several types of kinship matrix

Description

Function to create additive and dominance genomic relationship matrices from biallelic dosages.

Usage

kinship(M, type)

Arguments

M	dosage matrix. Assumes SNPs in M coded 0, 1, 2 (requires rounding dosages to integers). M is Nind x Mrow, numeric matrix, with row/columanes to indicate SNP/ind ID.

Value

square symmetric genomic relationship matrix

See Also

Other helper: backsolveSNPeff(), centerDosage(), crosses2predict(), dose2domDevGenotypic(), dose2domDev(), effectsArray2list(), genmap2recombfreq(), genoVarCovarMatFunc(), getAF(), getMAF(), getPropHom(), intensity(), maf_filter(), quadform(), remove_invariant()

wolfemd/genomicMateSelectR documentation built on July 1, 2022, 10:42 p.m.